STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACB86438.1PFAM: peptidase S58 DmpA; KEGG: amt:Amet_1884 peptidase S58, DmpA. (373 aa)    
Predicted Functional Partners:
ACB83910.1
PFAM: peptidase M55 D-aminopeptidase; KEGG: aoe:Clos_1006 peptidase M55 D-aminopeptidase.
   
 0.841
ACB85504.1
PFAM: alanine racemase domain protein; KEGG: vei:Veis_3378 alanine racemase domain protein.
  
     0.578
ACB84224.1
TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: bca:BCE_0308 aspartate racemase; Belongs to the aspartate/glutamate racemases family.
 
     0.547
ACB86437.1
PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_4629 extracellular solute-binding protein, family 1.
       0.434
Your Current Organism:
Natranaerobius thermophilus
NCBI taxonomy Id: 457570
Other names: N. thermophilus JW/NM-WN-LF, Natranaerobius thermophilus JW/NM-WN-LF, Natranaerobius thermophilus str. JW/NM-WN-LF, Natranaerobius thermophilus strain JW/NM-WN-LF
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