STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D6E9W3Ras-related protein RABD1. (149 aa)    
Predicted Functional Partners:
A0A1D6KZ33
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.880
A0A1D6L6W0
Tetratricopeptide repeat (TPR)-like superfamily protein.
    
 0.870
Pco082212(224)
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.
    
 0.867
A0A1D6DUL5
Transport protein particle (TRAPP) component.
    
 0.830
B4FZ61_MAIZE
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.830
B4FEQ9_MAIZE
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.810
IDP293
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.810
A0A1D6H948
RNA pseudouridine synthase 7.
      
 0.805
A0A1D6EC72
Transport protein particle (TRAPP) component.
    
 0.796
B6TBL7_MAIZE
Transport protein particle component, Bet3 containing protein.
    
 0.796
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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