STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D6F3N1RNA pseudouridine synthase 6 chloroplastic. (502 aa)    
Predicted Functional Partners:
Csu434
Protein Iojap-related mitochondrial.
  
 
 0.838
C0P9C2_MAIZE
Short integuments 2 mitochondrial.
   
 
 0.766
A0A1D6GTP1
50S ribosomal protein L24 chloroplastic; Belongs to the universal ribosomal protein uL24 family.
   
   0.732
Cl915_1(521)
GTP-binding family protein.
   
 
 0.709
A0A1D6GKB8
tRNA/rRNA methyltransferase (SpoU) family protein.
  
 
 0.709
A0A1D6MF89
GTP binding.
   
 
 0.709
A0A1D6Q0S6
tRNA modification GTPase trmE.
   
 
 0.709
B4FFL5_MAIZE
tRNA/rRNA methyltransferase (SpoU) family protein.
  
 
 0.709
B4G1J8_MAIZE
50S ribosomal protein L3-1 chloroplastic; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.682
K7VP39_MAIZE
50S ribosomal protein L3-2; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.682
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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