A0A1D6FH69 protein (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1D6FH69

tRNAse Z4. (998 aa)

Predicted Functional Partners:

A0A1X7YE61

0.881

Umc1982

0.881

A0A1D6MAS1

0.764

A0A1D6FL68

0.731

A0A1D6JNW9

0.727

Pco081178

0.707

B4FXJ7_MAIZE

0.706

A0A1D6N3X2

0.682

A0A1D6GTY7

0.676

A0A1D6HJ15

0.625

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6FH69	A0A1D6FL68	A0A1D6FH69	A0A1D6FL68	tRNAse Z4.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.731
A0A1D6FH69	A0A1D6GTY7	A0A1D6FH69	A0A1D6GTY7	tRNAse Z4.	Putative mitochondrial intermediate peptidase mitochondrial.	0.676
A0A1D6FH69	A0A1D6HJ15	A0A1D6FH69	A0A1D6HJ15	tRNAse Z4.	SAM-dependent MTase TRM10-type domain-containing protein.	0.625
A0A1D6FH69	A0A1D6JNW9	A0A1D6FH69	A0A1D6JNW9	tRNAse Z4.	Transducin family protein / WD-40 repeat family protein.	0.727
A0A1D6FH69	A0A1D6MAS1	A0A1D6FH69	A0A1D6MAS1	tRNAse Z4.	Periodic tryptophan protein 2.	0.764
A0A1D6FH69	A0A1D6N3X2	A0A1D6FH69	A0A1D6N3X2	tRNAse Z4.	Beta-Casp domain-containing protein.	0.682
A0A1D6FH69	A0A1X7YE61	A0A1D6FH69	A0A1X7YE61	tRNAse Z4.	Uncharacterized protein.	0.881
A0A1D6FH69	B4FXJ7_MAIZE	A0A1D6FH69	B4FXJ7	tRNAse Z4.	tRNA (adenine(58)-N(1))-methyltransferase.	0.706
A0A1D6FH69	Pco081178	A0A1D6FH69	B4FQH9	tRNAse Z4.	Metallopeptidase M24 family protein.	0.707
A0A1D6FH69	Umc1982	A0A1D6FH69	C0PDN9	tRNAse Z4.	P-loop containing nucleoside triphosphate hydrolase superfamily protein.	0.881
A0A1D6FL68	A0A1D6FH69	A0A1D6FL68	A0A1D6FH69	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	tRNAse Z4.	0.731
A0A1D6FL68	A0A1D6JNW9	A0A1D6FL68	A0A1D6JNW9	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Transducin family protein / WD-40 repeat family protein.	0.999
A0A1D6FL68	A0A1D6MAS1	A0A1D6FL68	A0A1D6MAS1	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Periodic tryptophan protein 2.	0.999
A0A1D6FL68	B4FXJ7_MAIZE	A0A1D6FL68	B4FXJ7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	tRNA (adenine(58)-N(1))-methyltransferase.	0.950
A0A1D6GTY7	A0A1D6FH69	A0A1D6GTY7	A0A1D6FH69	Putative mitochondrial intermediate peptidase mitochondrial.	tRNAse Z4.	0.676
A0A1D6GTY7	Pco081178	A0A1D6GTY7	B4FQH9	Putative mitochondrial intermediate peptidase mitochondrial.	Metallopeptidase M24 family protein.	0.713
A0A1D6HJ15	A0A1D6FH69	A0A1D6HJ15	A0A1D6FH69	SAM-dependent MTase TRM10-type domain-containing protein.	tRNAse Z4.	0.625
A0A1D6HJ15	B4FXJ7_MAIZE	A0A1D6HJ15	B4FXJ7	SAM-dependent MTase TRM10-type domain-containing protein.	tRNA (adenine(58)-N(1))-methyltransferase.	0.750
A0A1D6JNW9	A0A1D6FH69	A0A1D6JNW9	A0A1D6FH69	Transducin family protein / WD-40 repeat family protein.	tRNAse Z4.	0.727
A0A1D6JNW9	A0A1D6FL68	A0A1D6JNW9	A0A1D6FL68	Transducin family protein / WD-40 repeat family protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999