A0A1D6FIR2 protein (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1D6FIR2

Tetratricopeptide repeat protein 5. (332 aa)

Predicted Functional Partners:

Umc2770

0.851

A0A1D6ML85

0.813

A0A1D6EBU9

0.778

A0A1D6G3Z5

0.778

Cl5001_1(636)

0.778

Pco090715

0.744

A0A1D6JMR7

0.743

A0A1D6L548

0.736

C0HFM4_MAIZE

0.736

A0A1D6KRW8

0.722

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6EBU9	A0A1D6FIR2	A0A1D6EBU9	A0A1D6FIR2	Aspartate/glutamate/uridylate kinase family protein.	Tetratricopeptide repeat protein 5.	0.778
A0A1D6EBU9	A0A1D6JMR7	A0A1D6EBU9	A0A1D6JMR7	Aspartate/glutamate/uridylate kinase family protein.	60S ribosomal protein L5-1.	0.450
A0A1D6EBU9	A0A1D6KRW8	A0A1D6EBU9	A0A1D6KRW8	Aspartate/glutamate/uridylate kinase family protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.423
A0A1D6EBU9	A0A1D6ML85	A0A1D6EBU9	A0A1D6ML85	Aspartate/glutamate/uridylate kinase family protein.	Aspartate--tRNA ligase chloroplastic/mitochondrial.	0.651
A0A1D6EBU9	Pco090715	A0A1D6EBU9	A0A1D6GLR4	Aspartate/glutamate/uridylate kinase family protein.	5S rRNA binding protein.	0.569
A0A1D6EBU9	Umc2770	A0A1D6EBU9	C0PH60	Aspartate/glutamate/uridylate kinase family protein.	GMP synthase [glutamine-hydrolyzing].	0.614
A0A1D6FIR2	A0A1D6EBU9	A0A1D6FIR2	A0A1D6EBU9	Tetratricopeptide repeat protein 5.	Aspartate/glutamate/uridylate kinase family protein.	0.778
A0A1D6FIR2	A0A1D6G3Z5	A0A1D6FIR2	A0A1D6G3Z5	Tetratricopeptide repeat protein 5.	Amino acid kinase family protein.	0.778
A0A1D6FIR2	A0A1D6JMR7	A0A1D6FIR2	A0A1D6JMR7	Tetratricopeptide repeat protein 5.	60S ribosomal protein L5-1.	0.743
A0A1D6FIR2	A0A1D6KRW8	A0A1D6FIR2	A0A1D6KRW8	Tetratricopeptide repeat protein 5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.722
A0A1D6FIR2	A0A1D6L548	A0A1D6FIR2	A0A1D6L548	Tetratricopeptide repeat protein 5.	60S ribosomal protein L13a-1.	0.736
A0A1D6FIR2	A0A1D6ML85	A0A1D6FIR2	A0A1D6ML85	Tetratricopeptide repeat protein 5.	Aspartate--tRNA ligase chloroplastic/mitochondrial.	0.813
A0A1D6FIR2	C0HFM4_MAIZE	A0A1D6FIR2	C0HFM4	Tetratricopeptide repeat protein 5.	60S ribosomal protein L13a-1.	0.736
A0A1D6FIR2	Cl5001_1(636)	A0A1D6FIR2	A0A1D6N0H0	Tetratricopeptide repeat protein 5.	Amino acid kinase family protein.	0.778
A0A1D6FIR2	Pco090715	A0A1D6FIR2	A0A1D6GLR4	Tetratricopeptide repeat protein 5.	5S rRNA binding protein.	0.744
A0A1D6FIR2	Umc2770	A0A1D6FIR2	C0PH60	Tetratricopeptide repeat protein 5.	GMP synthase [glutamine-hydrolyzing].	0.851
A0A1D6G3Z5	A0A1D6FIR2	A0A1D6G3Z5	A0A1D6FIR2	Amino acid kinase family protein.	Tetratricopeptide repeat protein 5.	0.778
A0A1D6G3Z5	A0A1D6JMR7	A0A1D6G3Z5	A0A1D6JMR7	Amino acid kinase family protein.	60S ribosomal protein L5-1.	0.450
A0A1D6G3Z5	A0A1D6KRW8	A0A1D6G3Z5	A0A1D6KRW8	Amino acid kinase family protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.423
A0A1D6G3Z5	A0A1D6ML85	A0A1D6G3Z5	A0A1D6ML85	Amino acid kinase family protein.	Aspartate--tRNA ligase chloroplastic/mitochondrial.	0.651