STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D6GS05UTP:RNA uridylyltransferase 1. (789 aa)    
Predicted Functional Partners:
A0A1D6LE72
EMBRYO DEFECTIVE 140.
    
 
 0.557
A0A1D6EQY9
Sterile alpha motif (SAM) domain-containing protein; Belongs to the GroES chaperonin family.
   
 0.541
A0A1D6GRJ3
Uncharacterized protein.
    
 0.523
A0A1D6HQ89
DEAD-box ATP-dependent RNA helicase 34; Belongs to the DEAD box helicase family.
    
 0.523
A0A1D6MME3
Uncharacterized protein.
    
 
 0.513
K7UA17_MAIZE
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
    
 
 0.513
A0A1D6MYG4
Small RNA degrading nuclease 5.
     
 0.475
C4J3C8_MAIZE
Small RNA degrading nuclease 5.
     
 0.475
A0A1D6KND5
F14D16.29.
      
 0.459
A0A1D6KVS8
Exosome complex exonuclease RRP44 homolog A.
    
 
 0.449
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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