STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pco134259USP39 protein. (551 aa)    
Predicted Functional Partners:
A0A1D6P3B9
110 kDa U5 small nuclear ribonucleoprotein component CLO.
   
 0.985
A0A1D6N0T6
SART-1 family protein DOT2.
    
 0.980
A0A096RII5
Splicing factor, arginine/serine-rich 7.
   
 0.979
B4FHA5_MAIZE
Pre-mRNA processing ribonucleoprotein binding region-containing protein.
    
 0.965
AY110400
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.936
A0A1D6MPT6
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.932
A0A1D6H5E5
Pre-mRNA-splicing factor 3.
   
 0.931
A0A1D6QP50
Pre-mRNA-splicing factor 3.
   
 0.931
A0A1D6I3Q1
DEAD-box ATP-dependent RNA helicase 22.
   
 0.929
A0A1D6L1N9
DEAD-box ATP-dependent RNA helicase 21; Belongs to the DEAD box helicase family.
   
 0.929
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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