STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D6HFH7RING-H2 finger protein ATL5J. (153 aa)    
Predicted Functional Partners:
A0A1D6JXF4
17.4 kDa class I heat shock protein; Belongs to the small heat shock protein (HSP20) family.
      
 0.483
rpl23-A
50S ribosomal protein L23, chloroplastic; Binds to 23S rRNA.
      
 0.431
A0A1D6L8S4
Ubiquitin-60S ribosomal protein L40.
    
 0.409
B6SHW9_MAIZE
Ubiquitin-60S ribosomal protein L40-1.
    
 0.409
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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