STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIDP3215GRF1-interacting factor 3. (182 aa)    
Predicted Functional Partners:
A0A1D6QHX8
SWI/SNF complex subunit SWI3C.
   
 
 0.843
NNJA8_MAIZE
Ninja-family protein 8.
      
 0.779
UBF9
Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involve [...]
    
 
 0.762
A0A1D6GYQ1
Autophagy protein 5; Required for autophagy.
      
 0.760
A0A1D6DSX8
Cysteine protease.
      
 0.754
A0A1D6KJ13
Cysteine protease.
      
 0.754
C0P2W7_MAIZE
ETHYLENE INSENSITIVE 3-like 3 protein.
      
 0.752
A0A1D6Q5L0
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
   
  
 0.668
C4JC32_MAIZE
ETHYLENE INSENSITIVE 3-like 3 protein.
      
 0.667
A0A1D6FUW7
Chromatin structure-remodeling complex protein BSH.
    
 
 0.652
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.