STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D6JH19Oligouridylate-binding protein 1C. (220 aa)    
Predicted Functional Partners:
A0A1D6JH14
Oligouridylate-binding protein 1C.
 
      0.778
A0A1D6IK73
Serine/arginine-rich splicing factor SC35.
  
 
 0.654
A0A1D6F1Z3
Serine/arginine-rich splicing factor SC35.
  
 
 0.651
SC26
Splicing factor, arginine/serine-rich 2.
  
 
 0.648
A0A1D6QK58
Serine/arginine-rich splicing factor SC35.
  
 
 0.605
A0A1D6QLN5
Cleavage stimulating factor 64.
  
 
 0.559
IDP601
Ribosomal protein L7.
  
 
 0.550
B6TNV4_MAIZE
RNA binding protein.
  
   
 0.539
A0A1D6H288
Putative small nuclear ribonucleoprotein F.
    
 0.504
A0A1D6QP33
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.504
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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