A0A1D6MF05 protein (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1D6MF05

VHS domain-containing protein. (686 aa)

Predicted Functional Partners:

C4J6N6_MAIZE

0.485

C4J192_MAIZE

0.481

A0A1D6N3A1

0.464

A0A1D6G6A5

0.458

K7W3E0_MAIZE

0.449

A0A1D6FH69

0.437

Pco148275b

0.424

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6FH69	A0A1D6MF05	A0A1D6FH69	A0A1D6MF05	tRNAse Z4.	VHS domain-containing protein.	0.437
A0A1D6G6A5	A0A1D6MF05	A0A1D6G6A5	A0A1D6MF05	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	VHS domain-containing protein.	0.458
A0A1D6G6A5	A0A1D6N3A1	A0A1D6G6A5	A0A1D6N3A1	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.543
A0A1D6G6A5	C4J6N6_MAIZE	A0A1D6G6A5	C4J6N6	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Clathrin interactor EPSIN 1.	0.461
A0A1D6G6A5	K7W3E0_MAIZE	A0A1D6G6A5	K7W3E0	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	ENTH/VHS family protein.	0.461
A0A1D6MF05	A0A1D6FH69	A0A1D6MF05	A0A1D6FH69	VHS domain-containing protein.	tRNAse Z4.	0.437
A0A1D6MF05	A0A1D6G6A5	A0A1D6MF05	A0A1D6G6A5	VHS domain-containing protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.458
A0A1D6MF05	A0A1D6N3A1	A0A1D6MF05	A0A1D6N3A1	VHS domain-containing protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.464
A0A1D6MF05	C4J192_MAIZE	A0A1D6MF05	C4J192	VHS domain-containing protein.	RNA polymerase Rpb7 N-terminal domain-containing protein.	0.481
A0A1D6MF05	C4J6N6_MAIZE	A0A1D6MF05	C4J6N6	VHS domain-containing protein.	Clathrin interactor EPSIN 1.	0.485
A0A1D6MF05	K7W3E0_MAIZE	A0A1D6MF05	K7W3E0	VHS domain-containing protein.	ENTH/VHS family protein.	0.449
A0A1D6MF05	Pco148275b	A0A1D6MF05	C0HH20	VHS domain-containing protein.	GPI transamidase component family protein / Gaa1-like family protein.	0.424
A0A1D6N3A1	A0A1D6G6A5	A0A1D6N3A1	A0A1D6G6A5	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.543
A0A1D6N3A1	A0A1D6MF05	A0A1D6N3A1	A0A1D6MF05	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	VHS domain-containing protein.	0.464
A0A1D6N3A1	C4J6N6_MAIZE	A0A1D6N3A1	C4J6N6	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Clathrin interactor EPSIN 1.	0.461
A0A1D6N3A1	K7W3E0_MAIZE	A0A1D6N3A1	K7W3E0	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	ENTH/VHS family protein.	0.461
C4J192_MAIZE	A0A1D6MF05	C4J192	A0A1D6MF05	RNA polymerase Rpb7 N-terminal domain-containing protein.	VHS domain-containing protein.	0.481
C4J6N6_MAIZE	A0A1D6G6A5	C4J6N6	A0A1D6G6A5	Clathrin interactor EPSIN 1.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.461
C4J6N6_MAIZE	A0A1D6MF05	C4J6N6	A0A1D6MF05	Clathrin interactor EPSIN 1.	VHS domain-containing protein.	0.485
C4J6N6_MAIZE	A0A1D6N3A1	C4J6N6	A0A1D6N3A1	Clathrin interactor EPSIN 1.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.461