STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cl10007_1bGlycine-rich RNA-binding protein 3 mitochondrial. (261 aa)    
Predicted Functional Partners:
SC26
Splicing factor, arginine/serine-rich 2.
  
 
 0.678
C0PGG7_MAIZE
Zinc finger protein VAR3 chloroplastic.
   
 
 0.626
Pco079325
Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.
  
 0.553
A0A1D6Q0L8
Serine/arginine-rich splicing factor SR45a.
  
 
   0.536
B4F9N8_MAIZE
RNA-binding (RRM/RBD/RNP motifs) family protein.
  
 
  0.525
A0A1D6NRY6
Polyadenylate-binding protein 3.
  
 
  0.516
A0A1D6H288
Putative small nuclear ribonucleoprotein F.
    
 0.504
A0A1D6QP33
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.504
A0A1D6K2V6
Nuclear cap-binding protein subunit 1.
    
 0.499
A0A1D6IK73
Serine/arginine-rich splicing factor SC35.
  
 
0.490
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.