STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D6NC8250S ribosomal protein L13 chloroplastic. (477 aa)    
Predicted Functional Partners:
A0A1D6L8S4
Ubiquitin-60S ribosomal protein L40.
    
  0.726
B6SHW9_MAIZE
Ubiquitin-60S ribosomal protein L40-1.
    
  0.726
A0A1D6MSD3
Ribosomal_S27 domain-containing protein.
    
 0.698
B6T7T6_MAIZE
40S ribosomal protein S27a.
    
 0.698
UBF9
Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involve [...]
    
 0.698
A0A1D6FS31
E3 ubiquitin-protein ligase UPL4.
   
 
 0.654
A0A1D6LGG4
E3 ubiquitin-protein ligase UPL4.
   
 
 0.654
A0A1D6LGX2
E3 ubiquitin-protein ligase UPL4.
   
 
 0.654
A0A096QLF3
E3 ubiquitin-protein ligase UPL3.
   
 
 0.643
A0A1D6GXR8
Putative hect E3 ubiquitin ligase.
   
 
 0.643
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.