STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1D6NF15DNA repair helicase XPB1. (767 aa)    
Predicted Functional Partners:
B4G0C7_MAIZE
General transcription factor IIH subunit.
    
 0.976
A0A1D6DT30
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
  
 0.975
A0A1D6PW72
Putative RNA polymerase II transcription factor B subunit 1-1.
   
 0.972
C0P301_MAIZE
RNA polymerase II transcription factor B subunit 4.
    
 0.970
Pco103361
Cyclin-H1-1; Belongs to the cyclin family.
    
 0.969
A0A1D6J231
DNA repair helicase UVH6.
   
 0.953
A0A1D6KPG6
DNA repair protein RAD4.
   
 0.953
A0A1D6KGG6
RNA polymerase II transcription factor B subunit 5.
    
 0.947
B6SX64_MAIZE
REX1 DNA Repair family protein.
    
 0.947
A0A1D6M3F6
Putative cyclin-dependent kinase family protein; Belongs to the protein kinase superfamily.
    
 0.944
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.