STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Magi26728Serine/arginine-rich splicing factor RS31A. (255 aa)    
Predicted Functional Partners:
A0A1D6K2V6
Nuclear cap-binding protein subunit 1.
    
 0.906
AY109715
Serine/arginine-rich SC35-like splicing factor SCL30.
    
 0.884
A0A1D6H288
Putative small nuclear ribonucleoprotein F.
   
 0.882
Gpm911
Nuclear cap-binding protein subunit 2.
    
 0.880
C0PIA2_MAIZE
Nuclear cap-binding protein subunit 2.
    
 0.880
A0A1D6L506
Cleavage stimulation factor subunit 50.
    
 0.863
A0A1D6IPF6
HEAT repeat-containing protein.
    
 0.825
A0A1D6NET2
Uncharacterized protein.
    
 0.825
K7UQV5_MAIZE
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
    
 0.817
A0A1D6QP33
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.809
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.