STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gpm685Putative E3 ubiquitin-protein ligase RHC1A. (346 aa)    
Predicted Functional Partners:
MYBR78
MYB-related transcription factor.
      
 0.778
MYBR87
Putative homeodomain-like transcription factor superfamily protein.
      
 0.778
MYBR115
MYB-related transcription factor.
      
 0.778
Gpm881
Putative homeodomain-like transcription factor superfamily protein.
      
 0.778
K7U504_MAIZE
Putative RING zinc finger domain superfamily protein.
    
 
 0.486
A0A1D6L8S4
Ubiquitin-60S ribosomal protein L40.
    
 0.409
B6SHW9_MAIZE
Ubiquitin-60S ribosomal protein L40-1.
    
 0.409
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.