STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4FQC4_MAIZESerine--tRNA ligase cytoplasmic. (458 aa)    
Predicted Functional Partners:
Siy13053
Seryl-tRNA synthetase.
  
  
 
0.906
Ser1
Serine--tRNA ligase cytoplasmic.
  
  
 
0.900
Cl5001_1(636)
Amino acid kinase family protein.
  
  
 0.803
IDP1417
Protein KTI12-like protein.
     
 0.755
A0A1D6JT86
Methionine--tRNA ligase cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.739
K7UJ45_MAIZE
Methionine--tRNA ligase cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.739
K7VKI2_MAIZE
Methionine--tRNA ligase cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.739
A0A1D6M2P6
SAGA-associated factor 11.
    
 
 0.728
A0A1D6IL72
Phosphatidylinositol 3-and 4-kinase family protein with FAT domain; Belongs to the PI3/PI4-kinase family.
    
   0.706
Pco072468
Tryptophan--tRNA ligase cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.701
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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