ORRM1 protein (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ORRM1

Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites. (398 aa)

Predicted Functional Partners:

A0A1D6KJ69

0.808

Pco133651a

0.808

Cl40800_1c

0.808

C4J9S5_MAIZE

0.808

A0A1D6ME19

0.755

rpoB

0.729

Uaz7c01c01

0.693

A0A1D6PZ18

0.692

Prpo1

0.687

SC26

0.672

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6KJ69	ORRM1	A0A1D6KJ69	C0HFE5	RanBP2-type zinc finger protein.	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	0.808
A0A1D6KJ69	SC26	A0A1D6KJ69	A0A1D6K4S7	RanBP2-type zinc finger protein.	Splicing factor, arginine/serine-rich 2.	0.447
A0A1D6KJ69	rpoB	A0A1D6KJ69	P16023	RanBP2-type zinc finger protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.482
A0A1D6ME19	ORRM1	A0A1D6ME19	C0HFE5	TATA-binding protein-associated factor BTAF1.	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	0.755
A0A1D6PZ18	ORRM1	A0A1D6PZ18	C0HFE5	Ribonucleoprotein.	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	0.692
A0A1D6PZ18	SC26	A0A1D6PZ18	A0A1D6K4S7	Ribonucleoprotein.	Splicing factor, arginine/serine-rich 2.	0.687
C4J9S5_MAIZE	ORRM1	C4J9S5	C0HFE5	RanBP2-type zinc finger protein.	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	0.808
C4J9S5_MAIZE	SC26	C4J9S5	A0A1D6K4S7	RanBP2-type zinc finger protein.	Splicing factor, arginine/serine-rich 2.	0.447
C4J9S5_MAIZE	rpoB	C4J9S5	P16023	RanBP2-type zinc finger protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.482
Cl40800_1c	ORRM1	B4FC96	C0HFE5	RanBP2-type zinc finger protein.	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	0.808
Cl40800_1c	SC26	B4FC96	A0A1D6K4S7	RanBP2-type zinc finger protein.	Splicing factor, arginine/serine-rich 2.	0.447
Cl40800_1c	rpoB	B4FC96	P16023	RanBP2-type zinc finger protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.482
ORRM1	A0A1D6KJ69	C0HFE5	A0A1D6KJ69	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	RanBP2-type zinc finger protein.	0.808
ORRM1	A0A1D6ME19	C0HFE5	A0A1D6ME19	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	TATA-binding protein-associated factor BTAF1.	0.755
ORRM1	A0A1D6PZ18	C0HFE5	A0A1D6PZ18	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	Ribonucleoprotein.	0.692
ORRM1	C4J9S5_MAIZE	C0HFE5	C4J9S5	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	RanBP2-type zinc finger protein.	0.808
ORRM1	Cl40800_1c	C0HFE5	B4FC96	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	RanBP2-type zinc finger protein.	0.808
ORRM1	Pco133651a	C0HFE5	A0A1D6PXP7	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	RanBP2-type zinc finger protein.	0.808
ORRM1	Prpo1	C0HFE5	A0A1D6FAV4	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.687
ORRM1	SC26	C0HFE5	A0A1D6K4S7	Organelle RRM domain-containing protein 1, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Functions as major chloroplastic editing factor. Controls a majority of the chloroplastic editing sites.	Splicing factor, arginine/serine-rich 2.	0.672

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About