MADS42 protein (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MADS42

Agamous-like MADS-box protein AGL62. (468 aa)

Predicted Functional Partners:

A0A1D6I3Z8

0.850

A0A1D6I3Z9

0.850

Cad1

0.850

B4FBW5_MAIZE

0.850

B4FJW4_MAIZE

0.850

B4FR97_MAIZE

0.850

CAD2

0.850

Cl4921_1

0.850

CAD

0.850

A0A1D6FR70

0.753

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6FR70	MADS42	A0A1D6FR70	C0HG35	E3 ubiquitin-protein ligase KEG.	Agamous-like MADS-box protein AGL62.	0.753
A0A1D6I3Z8	MADS42	A0A1D6I3Z8	C0HG35	Putative cinnamyl alcohol dehydrogenase 6.	Agamous-like MADS-box protein AGL62.	0.850
A0A1D6I3Z9	MADS42	A0A1D6I3Z9	C0HG35	Putative cinnamyl alcohol dehydrogenase 6.	Agamous-like MADS-box protein AGL62.	0.850
B4FBW5_MAIZE	MADS42	B4FBW5	C0HG35	Putative cinnamyl alcohol dehydrogenase 1.	Agamous-like MADS-box protein AGL62.	0.850
B4FJW4_MAIZE	MADS42	B4FJW4	C0HG35	Putative cinnamyl alcohol dehydrogenase 9.	Agamous-like MADS-box protein AGL62.	0.850
B4FR97_MAIZE	MADS42	B4FR97	C0HG35	Putative cinnamyl alcohol dehydrogenase 6.	Agamous-like MADS-box protein AGL62.	0.850
CAD	MADS42	O24562	C0HG35	Probable cinnamyl alcohol dehydrogenase; Involved in lignin biosynthesis. May catalyze the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol; Belongs to the zinc-containing alcohol dehydrogenase family.	Agamous-like MADS-box protein AGL62.	0.850
CAD2	MADS42	B6U7D8	C0HG35	Putative cinnamyl alcohol dehydrogenase.	Agamous-like MADS-box protein AGL62.	0.850
Cad1	MADS42	B4FAJ0	C0HG35	Cinnamyl alcohol dehydrogenase1.	Agamous-like MADS-box protein AGL62.	0.850
Cl4921_1	MADS42	K7TH21	C0HG35	Putative cinnamyl-alcohol dehydrogenase family protein.	Agamous-like MADS-box protein AGL62.	0.850
MADS42	A0A1D6FR70	C0HG35	A0A1D6FR70	Agamous-like MADS-box protein AGL62.	E3 ubiquitin-protein ligase KEG.	0.753
MADS42	A0A1D6I3Z8	C0HG35	A0A1D6I3Z8	Agamous-like MADS-box protein AGL62.	Putative cinnamyl alcohol dehydrogenase 6.	0.850
MADS42	A0A1D6I3Z9	C0HG35	A0A1D6I3Z9	Agamous-like MADS-box protein AGL62.	Putative cinnamyl alcohol dehydrogenase 6.	0.850
MADS42	B4FBW5_MAIZE	C0HG35	B4FBW5	Agamous-like MADS-box protein AGL62.	Putative cinnamyl alcohol dehydrogenase 1.	0.850
MADS42	B4FJW4_MAIZE	C0HG35	B4FJW4	Agamous-like MADS-box protein AGL62.	Putative cinnamyl alcohol dehydrogenase 9.	0.850
MADS42	B4FR97_MAIZE	C0HG35	B4FR97	Agamous-like MADS-box protein AGL62.	Putative cinnamyl alcohol dehydrogenase 6.	0.850
MADS42	CAD	C0HG35	O24562	Agamous-like MADS-box protein AGL62.	Probable cinnamyl alcohol dehydrogenase; Involved in lignin biosynthesis. May catalyze the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol; Belongs to the zinc-containing alcohol dehydrogenase family.	0.850
MADS42	CAD2	C0HG35	B6U7D8	Agamous-like MADS-box protein AGL62.	Putative cinnamyl alcohol dehydrogenase.	0.850
MADS42	Cad1	C0HG35	B4FAJ0	Agamous-like MADS-box protein AGL62.	Cinnamyl alcohol dehydrogenase1.	0.850
MADS42	Cl4921_1	C0HG35	K7TH21	Agamous-like MADS-box protein AGL62.	Putative cinnamyl-alcohol dehydrogenase family protein.	0.850