STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Umc1959ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (868 aa)    
Predicted Functional Partners:
IDP264
Exonuclease 1.
  
 0.951
A0A1D6FF61
Putative DUF1767 domain containing protein.
    
 0.925
A0A1D6GWK1
Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.
   
 0.923
A0A1D6E1M0
Regulator of nonsense transcripts 1-like protein.
   
 0.920
A0A1D6HAQ9
DNA repair protein XRCC3-like protein.
  
 0.913
K7UFB2_MAIZE
DNA repair protein RAD50.
  
 0.885
Cl28653_1(116)
Cell cycle checkpoint protein RAD17.
   
 0.863
A0A1D6QTE4
DNA repair endonuclease UVH1.
    
 0.862
A0A1D6JPQ3
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
  
 0.829
A0A1D6L1J6
DNA topoisomerase type IA core.
  
 0.829
Your Current Organism:
Zea mays
NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize
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