NIP3-1 protein (Zea mays) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NIP3-1

Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes. (302 aa)

Predicted Functional Partners:

C0PG74_MAIZE

0.856

K7USZ5_MAIZE

0.856

SIP1-2

0.777

SIP1-1

0.758

SIP2-1

0.743

C0HFY5_MAIZE

0.673

Pco111657a

0.671

A0A1D6EZN3

0.663

A0A1D6HS43

0.663

A0A1D6KJI7

0.663

Your Current Organism:

Zea mays

NCBI taxonomy Id: 4577
Other names: Z. mays, Zea mays L., Zea mays var. japonica, maize

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1D6EZN3	NIP3-1	A0A1D6EZN3	Q9ATN1	Serrate RNA effector molecule.	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.663
A0A1D6HS43	NIP3-1	A0A1D6HS43	Q9ATN1	Serrate RNA effector molecule.	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.663
A0A1D6KJI7	NIP3-1	A0A1D6KJI7	Q9ATN1	Serrate RNA effector molecule.	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.663
C0HFY5_MAIZE	NIP3-1	C0HFY5	Q9ATN1	Boron transporter 1.	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.673
C0PG74_MAIZE	K7USZ5_MAIZE	C0PG74	K7USZ5	Putative splicing factor 3A subunit 1.	Putative splicing factor 3A subunit 1.	0.900
C0PG74_MAIZE	NIP3-1	C0PG74	Q9ATN1	Putative splicing factor 3A subunit 1.	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.856
K7USZ5_MAIZE	C0PG74_MAIZE	K7USZ5	C0PG74	Putative splicing factor 3A subunit 1.	Putative splicing factor 3A subunit 1.	0.900
K7USZ5_MAIZE	NIP3-1	K7USZ5	Q9ATN1	Putative splicing factor 3A subunit 1.	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.856
NIP3-1	A0A1D6EZN3	Q9ATN1	A0A1D6EZN3	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Serrate RNA effector molecule.	0.663
NIP3-1	A0A1D6HS43	Q9ATN1	A0A1D6HS43	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Serrate RNA effector molecule.	0.663
NIP3-1	A0A1D6KJI7	Q9ATN1	A0A1D6KJI7	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Serrate RNA effector molecule.	0.663
NIP3-1	C0HFY5_MAIZE	Q9ATN1	C0HFY5	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Boron transporter 1.	0.673
NIP3-1	C0PG74_MAIZE	Q9ATN1	C0PG74	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Putative splicing factor 3A subunit 1.	0.856
NIP3-1	K7USZ5_MAIZE	Q9ATN1	K7USZ5	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Putative splicing factor 3A subunit 1.	0.856
NIP3-1	Pco111657a	Q9ATN1	B6U4C0	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Boron transporter 1.	0.671
NIP3-1	SIP1-1	Q9ATN1	Q9ATM3	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Aquaporin SIP1-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.758
NIP3-1	SIP1-2	Q9ATN1	Q9ATM2	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Aquaporin SIP1-2; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.777
NIP3-1	SIP2-1	Q9ATN1	Q9ATM1	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Aquaporin SIP2-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.743
Pco111657a	NIP3-1	B6U4C0	Q9ATN1	Boron transporter 1.	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.671
SIP1-1	NIP3-1	Q9ATM3	Q9ATN1	Aquaporin SIP1-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	Aquaporin NIP3-1; Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	0.758