Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0006Hypothetical protein. (183 aa)    
Predicted Functional Partners:
glnA
Glutamine synthetase.
       0.838
Lrub_0010
General secretion pathway protein LspH.
 
     0.741
lspK
Type II secretory pathway protein LspK.
 
     0.737
lspJ
Type II secretory pathway protein LspJ.
 
     0.736
lspI
Type II secretory pathway protein LspI.
 
     0.732
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
       0.729
lspF
Type II secretory pathway protein LspF.
       0.727
lspG
Type II secretory pathway protein LspG.
       0.698
Lrub_1178
Type IV pilus biogenesis protein PilP.
  
     0.606
Lrub_1749
LysM domain-containing protein.
  
    0.574
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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