STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lssALegionella secretion system protein A. (236 aa)    
Predicted Functional Partners:
Lrub_0042
Type I secretion system LssZ.
       0.577
lssY
Secretion system protein Y.
 
     0.525
ala
D-alanine-aminotransferase.
  
  
 0.468
Lrub_1577
Ribonuclease, T2 family; Belongs to the RNase T2 family.
  
     0.468
dacA
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.449
Lrub_0039
Hypothetical protein; Belongs to the UPF0250 family.
       0.444
lipB
Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
       0.444
comA
DNA uptake/competence protein ComA.
     
 0.406
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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