Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lssD_1Secretion system protein D. (377 aa)    
Predicted Functional Partners:
Lrub_0046
Toxin secretion ATP binding protein.
 0.976
Lrub_1213
Agglutination protein.
 
 0.888
Lrub_0171
ABC transporter.
 
 0.882
Lrub_0170
Toxin secretion ATP binding protein.
 
 0.881
Lrub_1214
Periplasmic protein.
 
   
 0.785
Lrub_0507
Toxin secretion ATP binding protein.
 
  
 0.779
rtxA-2
Structural toxin protein RtxA.
  
    0.757
Lrub_1278
Hypothetical protein.
 
     0.749
Lrub_1044
Outer membrane protein TolC.
 
 0.687
rtxA2
Structural toxin protein RtxA.
  
     0.669
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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