Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilBPilus assembly protein PilB. (574 aa)    
Predicted Functional Partners:
pilC
Pilus assembly protein PilC.
 
 
 0.998
lspF
Type II secretory pathway protein LspF.
 
 
 0.993
Lrub_0053
Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.988
Lrub_2173
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.904
lspG
Type II secretory pathway protein LspG.
 
 0.825
pilZ_1
Type 4 fimbrial biogenesis protein PilZ.
  
 
 
 0.824
pilM
Tfp pilus assembly protein, ATPase PilM.
 
 
 
 0.786
Lrub_0010
General secretion pathway protein LspH.
  
 0.781
lspI
Type II secretory pathway protein LspI.
  
 0.781
pilE_2
Tfp pilus assembly protein, major type IV pilin class A.
 
 0.754
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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