STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubRRubredoxin. (58 aa)    
Predicted Functional Partners:
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.801
pta_1
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
     
 0.650
pta_2
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
     
 0.650
Lrub_1199
2-oxoglutarate ferredoxin oxidoreductase beta subunit.
    
 0.592
hemL
Glutamate-1-semialdehyde-2,1-aminomutase.
       0.591
glnA
Glutamine synthetase.
     
 0.549
pykA
Pyruvate kinase II; Belongs to the pyruvate kinase family.
     
 0.542
Lrub_2660
Alkane monooxygenase.
 
  
 0.532
Lrub_1872
Sensory box histidine kinase/response regulator.
     
 0.413
Lrub_0793
Oxidoreductase, FAD-binding protein.
   
  
 0.400
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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