terC protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

terC

Membrane protein TerC; Possibly involved in tellurium resistance. (238 aa)

Predicted Functional Partners:

Lrub_0552

0.784

pcnB

0.743

folK

0.743

mutH

0.499

Lrub_0350

0.475

Lrub_0071

0.446

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_0071	folK	Lrub_0071	Lrub_0070	Universal stress protein A UspA.	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.	0.607
Lrub_0071	pcnB	Lrub_0071	Lrub_0069	Universal stress protein A UspA.	poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.597
Lrub_0071	terC	Lrub_0071	Lrub_0068	Universal stress protein A UspA.	Membrane protein TerC; Possibly involved in tellurium resistance.	0.446
Lrub_0350	folK	Lrub_0350	Lrub_0070	Transmembrane protein.	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.	0.475
Lrub_0350	pcnB	Lrub_0350	Lrub_0069	Transmembrane protein.	poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.475
Lrub_0350	terC	Lrub_0350	Lrub_0068	Transmembrane protein.	Membrane protein TerC; Possibly involved in tellurium resistance.	0.475
Lrub_0552	terC	Lrub_0552	Lrub_0068	Mg2+ and Co2+ transporter CorC.	Membrane protein TerC; Possibly involved in tellurium resistance.	0.784
folK	Lrub_0071	Lrub_0070	Lrub_0071	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.	Universal stress protein A UspA.	0.607
folK	Lrub_0350	Lrub_0070	Lrub_0350	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.	Transmembrane protein.	0.475
folK	pcnB	Lrub_0070	Lrub_0069	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.	poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.966
folK	terC	Lrub_0070	Lrub_0068	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.	Membrane protein TerC; Possibly involved in tellurium resistance.	0.743
mutH	terC	Lrub_0511	Lrub_0068	DNA mismatch repair protein mutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family.	Membrane protein TerC; Possibly involved in tellurium resistance.	0.499
pcnB	Lrub_0071	Lrub_0069	Lrub_0071	poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Universal stress protein A UspA.	0.597
pcnB	Lrub_0350	Lrub_0069	Lrub_0350	poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Transmembrane protein.	0.475
pcnB	folK	Lrub_0069	Lrub_0070	poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.	0.966
pcnB	terC	Lrub_0069	Lrub_0068	poly(A) polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Membrane protein TerC; Possibly involved in tellurium resistance.	0.743
terC	Lrub_0071	Lrub_0068	Lrub_0071	Membrane protein TerC; Possibly involved in tellurium resistance.	Universal stress protein A UspA.	0.446
terC	Lrub_0350	Lrub_0068	Lrub_0350	Membrane protein TerC; Possibly involved in tellurium resistance.	Transmembrane protein.	0.475
terC	Lrub_0552	Lrub_0068	Lrub_0552	Membrane protein TerC; Possibly involved in tellurium resistance.	Mg2+ and Co2+ transporter CorC.	0.784
terC	folK	Lrub_0068	Lrub_0070	Membrane protein TerC; Possibly involved in tellurium resistance.	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase.	0.743