STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0123Putative RNA helicase. (1133 aa)    
Predicted Functional Partners:
Lrub_1478
Putative type I restriction enzyme M protein.
  
  
 0.631
Lrub_0122
Putative methyltransferase.
 
     0.510
Lrub_1756
Acid sphingomyelinase-like phosphodiesterase.
  
     0.492
Lrub_2783
Hypothetical protein.
  
     0.473
Lrub_1263
Hypothetical protein.
  
     0.440
Lrub_2378
Hypothetical protein.
 
     0.432
Lrub_1753
Hypothetical protein.
  
     0.417
yjeA
Endo-1,4-beta-xylanase.
 
     0.414
Lrub_1480
Type I restriction enzyme EcoKI subunit R.
  
    0.414
Lrub_0621
Hypothetical protein.
  
    0.410
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.