Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lrub_0136Poly(3-hydroxybutyrate) depolymerase. (438 aa)    
Predicted Functional Partners:
Lrub_1722
Poly-beta-hydroxybutyrate polymerase.
 
  
 0.900
phbC_1
Polyhydroxyalkanoic synthase.
 
  
 0.896
phbC_2
Polyhydroxyalkanoic synthase.
 
  
 0.896
Lrub_1715
Putative Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.777
Lrub_0783
Hypothetical protein.
 
  
 0.740
pta_2
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
 
  
 0.737
pta_1
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
 
  
 0.735
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.680
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.680
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
      
 0.598
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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