Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lrub_0140HDOD domain protein. (380 aa)    
Predicted Functional Partners:
Lrub_0073
Guanylate cyclase.
 
     0.596
gacS/letS
Transmission sensor LetS.
   
 
 0.548
Lrub_0131
Regulatory protein (GGDEF and EAL domains).
   
   0.518
flgI
Flagellar P-ring protein (precursor) FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.518
smc_4
Chromosome partition protein Smc.
   
   0.502
Lrub_0139
Hypothetical protein.
       0.499
Lrub_1682
Signal transduction protein.
  
     0.476
flgH
Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.464
Lrub_2812
Putative Diguanylate phosphodiesterase (EAL domain).
  
     0.464
Lrub_1128
Sensor kinase HydH.
  
 
   0.454
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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