Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lrub_0162Bacterioferritin (cytochrome b1); Belongs to the Dps family. (185 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.828
Lrub_1330
Transmembrane protein.
  
    0.766
Lrub_2071
Hemerythrin HHE cation binding domain protein.
   
    0.708
Lrub_1028
Hypothetical protein.
  
  
 0.620
yjbJ_1
Stress response protein; Belongs to the UPF0337 (CsbD) family.
  
    0.603
yjbJ_2
Stress response protein; Belongs to the UPF0337 (CsbD) family.
  
    0.603
Lrub_1208
Regulatory protein (GGDEF domain).
   
    0.589
Lrub_1875
Sensor histidine kinase.
   
    0.589
Lrub_2287
Protein with a Dodecin-like topology.
   
    0.564
Lrub_0488
Hypothetical protein.
 
    0.485
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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