Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lrub_0176Amine oxidase, flavin containing. (444 aa)    
Predicted Functional Partners:
Lrub_1442
Hypothetical protein.
     0.839
Lrub_0175
GNAT family acetyltransferase.
       0.628
Lrub_1963
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.605
ctaG
Cytochrome c oxidase assembly protein.
 
      0.574
Lrub_0177
Short chain-specific acyl CoA dehydrogenase.
       0.536
Lrub_0178
Arginine-binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
       0.536
bcp
Acetylpolyamine aminohydrolase.
       0.439
Lrub_2807
Deoxyribodipyrimidine photolyase phrB; Belongs to the DNA photolyase family.
 
   
 0.424
Lrub_1961
Hypothetical protein.
       0.423
Lrub_2808
Deoxyribodipyrimidine photolyase.
 
   
 0.417
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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