STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0201Zn-dependent protease. (473 aa)    
Predicted Functional Partners:
Lrub_0868
Peptidase, M23/M37 family.
 
 
 
 0.953
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.842
Lrub_1872
Sensory box histidine kinase/response regulator.
    
 0.791
smc_4
Chromosome partition protein Smc.
    
 0.742
Lrub_1208
Regulatory protein (GGDEF domain).
    
 0.733
Lrub_1875
Sensor histidine kinase.
    
 0.733
Lrub_0189
GGDEF domain-containing sensory box protein.
    
 0.713
Lrub_1459
Regulatory protein (GGDEF and EAL domains).
    
 0.713
Lrub_2753
Regulatory protein (GGDEF, PAS, PAC domains).
    
 0.669
Lrub_0168
Sensory box protein.
     
 0.657
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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