Lrub_0266 protein (Legionella rubrilucens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Lrub_0266

ABC transport system periplasmic substrate binding protein. (307 aa)

Predicted Functional Partners:

Lrub_0264

0.997

Lrub_0265

0.996

Lrub_0267

0.988

ttg2D

0.957

ttg2B

0.954

ttg2A

0.952

Lrub_1232

0.905

yrbD

0.839

pal

0.799

cpoB

0.772

Your Current Organism:

Legionella rubrilucens

NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrub_0264	Lrub_0265	Lrub_0264	Lrub_0265	ABC transporter permease.	ABC transporter ATP binding protein.	0.999
Lrub_0264	Lrub_0266	Lrub_0264	Lrub_0266	ABC transporter permease.	ABC transport system periplasmic substrate binding protein.	0.997
Lrub_0264	Lrub_0267	Lrub_0264	Lrub_0267	ABC transporter permease.	Transport protein.	0.920
Lrub_0264	Lrub_1232	Lrub_0264	Lrub_1232	ABC transporter permease.	Putative anti-sigma-B factor antagonist (Anti-anti-sigma-B factor).	0.948
Lrub_0264	cpoB	Lrub_0264	Lrub_0269	ABC transporter permease.	Outer membrane protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.	0.739
Lrub_0264	pal	Lrub_0264	Lrub_0268	ABC transporter permease.	Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.790
Lrub_0264	ttg2A	Lrub_0264	Lrub_1228	ABC transporter permease.	Toluene tolerance ABC transporter ATP binding protein Ttg2A.	0.994
Lrub_0264	ttg2B	Lrub_0264	Lrub_1229	ABC transporter permease.	Toluene tolerance protein Ttg2B.	0.919
Lrub_0264	ttg2D	Lrub_0264	Lrub_1231	ABC transporter permease.	Toluene tolerance protein Ttg2D.	0.894
Lrub_0264	yrbD	Lrub_0264	Lrub_1230	ABC transporter permease.	Toluene transporter subunit: membrane component of ABC superfamily protein.	0.993
Lrub_0265	Lrub_0264	Lrub_0265	Lrub_0264	ABC transporter ATP binding protein.	ABC transporter permease.	0.999
Lrub_0265	Lrub_0266	Lrub_0265	Lrub_0266	ABC transporter ATP binding protein.	ABC transport system periplasmic substrate binding protein.	0.996
Lrub_0265	Lrub_0267	Lrub_0265	Lrub_0267	ABC transporter ATP binding protein.	Transport protein.	0.936
Lrub_0265	Lrub_1232	Lrub_0265	Lrub_1232	ABC transporter ATP binding protein.	Putative anti-sigma-B factor antagonist (Anti-anti-sigma-B factor).	0.975
Lrub_0265	cpoB	Lrub_0265	Lrub_0269	ABC transporter ATP binding protein.	Outer membrane protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.	0.693
Lrub_0265	pal	Lrub_0265	Lrub_0268	ABC transporter ATP binding protein.	Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.776
Lrub_0265	ttg2A	Lrub_0265	Lrub_1228	ABC transporter ATP binding protein.	Toluene tolerance ABC transporter ATP binding protein Ttg2A.	0.839
Lrub_0265	ttg2B	Lrub_0265	Lrub_1229	ABC transporter ATP binding protein.	Toluene tolerance protein Ttg2B.	0.992
Lrub_0265	ttg2D	Lrub_0265	Lrub_1231	ABC transporter ATP binding protein.	Toluene tolerance protein Ttg2D.	0.894
Lrub_0265	yrbD	Lrub_0265	Lrub_1230	ABC transporter ATP binding protein.	Toluene transporter subunit: membrane component of ABC superfamily protein.	0.987