Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lrub_0301IcmX (IcmY). (473 aa)    
Predicted Functional Partners:
icmW
Intracellular multiplication protein IcmW.
     
 0.945
Lrub_0298
DotA.
   
   0.943
Lrub_2009
Protein IcmE (DotG).
    
 
 0.931
icmV
Intracellular multiplication protein IcmV.
     
 0.893
Lrub_2010
Protein IcmG (DotF).
    
 
 0.834
Lrub_2008
IcmK protein.
    
 
 0.813
dotC
Defect in organelle trafficking lipoprotein DotC.
      
 0.598
Lrub_0297
DotB.
      
 0.598
htpB
Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
      
 0.598
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.598
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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