STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0328D-alanyl-D-alanine carboxypeptidase. (420 aa)    
Predicted Functional Partners:
ftsI
Peptidoglycan synthetase FtsI precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
     
 0.768
mrdA
Penicillin binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
 0.683
dacB
D-alanyl-D-alanine carboxypeptidase.
     
 0.644
dacA
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.635
ponA
Penicillin binding protein 1A.
     
 0.597
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.560
Lrub_2824
Chitinase.
  
  
  0.553
Lrub_0329
Hypothetical protein.
       0.538
chiA
Chitinase A precursor.
  
  
 0.496
gacS/letS
Transmission sensor LetS.
     
 0.483
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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