Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yahKPutative hydroxyacid dehydrogenase. (347 aa)    
Predicted Functional Partners:
Lrub_2324
Alcohol dehydrogenase.
  
  
 
0.867
Lrub_0449
Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.856
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
    
 0.846
Lrub_0793
Oxidoreductase, FAD-binding protein.
  
 
 0.662
Lrub_0386
Muropeptide transporter.
       0.639
Lrub_2418
Oxidoreductase.
    
 0.618
Lrub_0384
salicylyl-CoA 5-hydroxylase.
       0.570
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.538
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.538
cycA
Cytochrome c.
   
 
  0.508
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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