Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wrbA_1Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family. (199 aa)    
Predicted Functional Partners:
wrbA_2
Flavoprotein WrbA (Trp repressor binding protein).
  
  
 
0.862
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.839
Lrub_0411
Transporter of the major facilitator superfamily (MFS).
       0.766
Lrub_0413
Hypothetical protein.
       0.728
Lrub_0414
Hypothetical protein.
       0.728
Lrub_0415
Carbonic anhydrase Mig5.
       0.700
Lrub_1088
DNA-binding protein; Belongs to the Dps family.
   
  
 0.692
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
    0.636
rbn
Ribonuclease BN.
       0.615
queF
GTP cyclohydrolase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
  
    0.591
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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