STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0424Outer membrane protein, OmpA family protein. (234 aa)    
Predicted Functional Partners:
lphA
LphA (DotK).
  
 
   0.957
Lrub_2579
Major outer membrane protein.
    
   0.885
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.832
Lrub_2009
Protein IcmE (DotG).
 
 
 
 0.831
Lrub_2008
IcmK protein.
   
   0.790
Lrub_2010
Protein IcmG (DotF).
   
   0.788
dotD
Lipoprotein DotD.
    
   0.787
dotC
Defect in organelle trafficking lipoprotein DotC.
    
   0.787
Lrub_1578
Hypothetical protein.
    
   0.787
Lrub_2260
Neurogenic locus notch like protein precursor.
    
   0.787
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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