Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lrub_0793 | djlA | Lrub_0793 | Lrub_2035 | Oxidoreductase, FAD-binding protein. | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.518 |
| Lrub_0793 | dnaK | Lrub_0793 | Lrub_0926 | Oxidoreductase, FAD-binding protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.611 |
| Lrub_0793 | erpA | Lrub_0793 | Lrub_0455 | Oxidoreductase, FAD-binding protein. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.644 |
| Lrub_0793 | iscS | Lrub_0793 | Lrub_1149 | Oxidoreductase, FAD-binding protein. | Cysteine desulfurase NifS. | 0.988 |
| Lrub_0793 | nifU | Lrub_0793 | Lrub_2080 | Oxidoreductase, FAD-binding protein. | Nitrogen fixation protein NifU. | 0.941 |
| Lrub_0793 | nifU_2 | Lrub_0793 | Lrub_1150 | Oxidoreductase, FAD-binding protein. | NifU-like protein. | 0.941 |
| Lrub_1557 | erpA | Lrub_1557 | Lrub_0455 | Hypothetical protein. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.562 |
| Lrub_2077 | erpA | Lrub_2077 | Lrub_0455 | ATP transporter ATP- binding protein. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.551 |
| Lrub_2077 | nifU | Lrub_2077 | Lrub_2080 | ATP transporter ATP- binding protein. | Nitrogen fixation protein NifU. | 0.975 |
| Lrub_2077 | nifU_2 | Lrub_2077 | Lrub_1150 | ATP transporter ATP- binding protein. | NifU-like protein. | 0.865 |
| djlA | Lrub_0793 | Lrub_2035 | Lrub_0793 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Oxidoreductase, FAD-binding protein. | 0.518 |
| djlA | dnaK | Lrub_2035 | Lrub_0926 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.933 |
| djlA | erpA | Lrub_2035 | Lrub_0455 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.784 |
| djlA | grlA | Lrub_2035 | Lrub_2584 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.743 |
| djlA | iscS | Lrub_2035 | Lrub_1149 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Cysteine desulfurase NifS. | 0.837 |
| djlA | nifU | Lrub_2035 | Lrub_2080 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Nitrogen fixation protein NifU. | 0.987 |
| djlA | nifU_2 | Lrub_2035 | Lrub_1150 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | NifU-like protein. | 0.987 |
| dnaK | Lrub_0793 | Lrub_0926 | Lrub_0793 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Oxidoreductase, FAD-binding protein. | 0.611 |
| dnaK | djlA | Lrub_0926 | Lrub_2035 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.933 |
| dnaK | erpA | Lrub_0926 | Lrub_0455 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.552 |
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