STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0478Hypothetical protein; Belongs to the UPF0276 family. (283 aa)    
Predicted Functional Partners:
Lrub_0477
Hypothetical protein.
 
  
 0.996
Lrub_0476
Signal peptide protein.
 
  
 0.992
Lrub_0473
Putative YceI-like family protein; Belongs to the UPF0312 family.
       0.764
yceI
Polyprenyl-pyrophosphate binding protein; Belongs to the UPF0312 family.
       0.764
cybA
Cytochrome b561 transmembrane protein.
       0.760
lvhB3
Type IV secretion system protein VirB3.
   
    0.713
Lrub_2372
Carboxymuconolactone decarboxylase family transporter; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
   
  
 0.572
ctpA_1
Cation efflux transporter.
   
    0.570
ctpA_3
Cation efflux transporter.
   
    0.570
Lrub_1254
Transmembrane protein.
  
    0.531
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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