Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Lrub_0482Squalene and phytoene synthase. (318 aa)    
Predicted Functional Partners:
ispB_2
Octaprenyl diphosphate synthase IspB.
  
 0.880
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.843
gap
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.831
Lrub_2045
Sterol desaturase-related protein.
  
 0.823
Lrub_0483
Glycosyl transferase, family 2.
  
  
 0.779
Lrub_1423
MATE efflux family protein.
   
    0.776
ispB_1
Octaprenyl diphosphate synthase IspB; Belongs to the FPP/GGPP synthase family.
  
 0.761
Lrub_0576
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.750
Lrub_1024
Hypothetical protein.
    
 0.734
Lrub_0899
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.731
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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