STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0540L-gulono-gamma-lactone oxidase. (614 aa)    
Predicted Functional Partners:
bcp
Acetylpolyamine aminohydrolase.
  
     0.772
chiA
Chitinase A precursor.
  
     0.766
Lrub_2824
Chitinase.
  
     0.766
Lrub_1540
Acid sphingomyelinase-like phosphodiesterase.
  
     0.765
Lrub_1910
Coiled-coil protein.
  
     0.765
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.763
Lrub_2574
Ankyrin repeat-containing protein.
  
 
   0.758
plaB
Phospholipase.
  
     0.757
Lrub_0763
Hypothetical protein.
  
  
  0.752
Lrub_1879
Protein phosphatase 2C.
  
 
   0.742
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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