STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0604Glycine cleavage T protein. (328 aa)    
Predicted Functional Partners:
cptB
Antitoxin CptB.
 
     0.666
erpA
Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG.
  
 
 0.532
hemD
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
     
 0.487
Lrub_0280
Type II/III secretion system protein.
  
     0.466
tolA
TolA colicin import membrane protein.
  
     0.458
iraA
Small-molecule methyltransferase IraA.
  
     0.444
Lrub_1182
DamX-related protein.
  
     0.427
Lrub_1561
Fe-S protein.
  
     0.424
sufA
Fe-S cluster assembly protein; Belongs to the HesB/IscA family.
   
 
 0.421
Lrub_2717
Hypothetical protein; Belongs to the UPF0149 family.
  
     0.415
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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