STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0621Hypothetical protein. (299 aa)    
Predicted Functional Partners:
bioI
Biotin biosynthesis cytochrome P450.
  
 
  0.843
Lrub_1553
Transmembrane protein.
  
 
 
 0.836
Lrub_1756
Acid sphingomyelinase-like phosphodiesterase.
 
  
 0.818
Lrub_0620
Carbon storage regulator CsrA.
       0.800
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.799
Lrub_0856
Ankyrin repeat-containing protein.
  
 
  0.794
Lrub_1438
2-acylglycerophosphoethanolamine acyltransferase.
   
 0.788
yjeA
Endo-1,4-beta-xylanase.
  
 
 
 0.787
Lrub_2783
Hypothetical protein.
  
    0.785
iraA
Small-molecule methyltransferase IraA.
  
     0.765
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.