STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0627Transposase ORF-A, IS-type. (52 aa)    
Predicted Functional Partners:
Lrub_0626
ISxcC1 transposase.
 
    0.789
Lrub_1470
Transposase ORF-A, IS-type.
  
     0.724
Lrub_1467
Transposase ORF-A, IS-type.
  
     0.638
Lrub_1471
ISxcC1 transposase.
 
   
 0.589
capL
Protein capL; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
    0.559
Lrub_0633
Chloramphenicol acetyltransferase.
  
    0.531
wecB
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
    0.518
Lrub_0628
Hypothetical protein.
  
    0.488
Lrub_0629
Hypothetical protein.
  
    0.469
iolG_1
Myo-inositol-2-dehydrogenase.
  
    0.457
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.