STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0629Hypothetical protein. (431 aa)    
Predicted Functional Partners:
wzt
ABC transporter of LPS O-antigen.
  
 
 0.845
wecB
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
 
 0.845
wzm
ABC transporter of LPS O-antigen, Wzm.
  
  
 0.840
capL
Protein capL; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.815
Lrub_0633
Chloramphenicol acetyltransferase.
  
  
 0.781
rfbA
Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.763
iolG_1
Myo-inositol-2-dehydrogenase.
       0.747
Lrub_0628
Hypothetical protein.
      
0.718
Lrub_0627
Transposase ORF-A, IS-type.
  
    0.472
Lrub_2842
O-antigen biosynthesis protein.
  
 
 0.466
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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