Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0637Hypothetical protein. (500 aa)    
Predicted Functional Partners:
iraA
Small-molecule methyltransferase IraA.
     
 0.836
Lrub_0905
Zip family transporter.
  
 
   0.594
Lrub_1245
Amino acid (lysine) permease.
  
     0.506
Lrub_2606
Cysteine protease.
  
     0.496
Lrub_1694
Cysteine protease.
  
     0.481
lly
4-hydroxyphenylpyruvate dioxygenase.
     
 0.436
Lrub_1566
Protein-tyrosine phosphatase.
  
     0.418
Lrub_2108
Amino acid antiporter.
  
 
   0.411
capL
Protein capL; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.409
Lrub_1902
Amino acid (lysine) permease.
  
     0.407
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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