STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0640GGDEF domain-containing protein. (434 aa)    
Predicted Functional Partners:
Lrub_2329
Metal dependent phosphohydrolase.
 
 
   0.903
Lrub_0168
Sensory box protein.
 
 0.874
stuC_1
Sensor histidine kinase.
 
0.848
Lrub_2768
Signal transduction protein (EAL/GGDEF domain protein).
 
 
  0.842
Lrub_0641
Glutamate synthetase.
       0.841
Lrub_0521
Regulatory protein (EAL domain).
  
 
  0.810
Lrub_0150
Regulatory protein (EAL domain).
   
 0.809
Lrub_1215
Two component histidine kinase.
  
 
 0.798
Lrub_1939
Regulatory protein (GGDEF and EAL domains).
  
  0.798
gacS/letS
Transmission sensor LetS.
 0.798
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.