STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrub_0653Opacity protein-like surface antigen. (212 aa)    
Predicted Functional Partners:
Lrub_0654
Opacity protein-like surface antigen.
      
0.784
lvrA
Legionella vir region protein.
  
     0.589
Lrub_2009
Protein IcmE (DotG).
  
     0.585
Lrub_0875
Outer membrane protein OmpH; Belongs to the skp family.
  
 
   0.565
Lrub_0652
Hypothetical protein.
       0.559
Lrub_0655
D-ribulose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.511
Lrub_0968
Putative Smr domain protein.
  
     0.499
Lrub_1702
Putative membrane protein YdgA-like protein.
  
     0.493
Lrub_2608
Putative helicase/relaxase.
  
 
   0.482
Lrub_0710
Putative prophage repressor CI-like protein.
  
     0.470
Your Current Organism:
Legionella rubrilucens
NCBI taxonomy Id: 458
Other names: ATCC 35304, CCUG 29671, CIP 103848, DSM 11884, JCM 7565, L. rubrilucens, NCTC 11987, strain WA-270A-C2
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